miRBase entry: mdo-mir-1643b

Stem-loop mdo-mir-1643b


Accession
MI0023822
Description
Monodelphis domestica mdo-mir-1643b precursor miRNA


Sequence

328 reads, 9 reads per million, 5 experiments
AUCCUUACUAAGGGCACUUUUUCugccaacugaggaAAAAGUGCUGCUAGUGGGGAAGU
.(((((((((..((((((((((((.........))))))))))))..)))))))))...

Structure
--A         AG            gcc 
   UCCUUACUA  GGCACUUUUUCu   a
   |||||||||  ||||||||||||   a
   AGGGGUGAU  UCGUGAAAAagg   c
UGA         CG            agu 


Annotation confidence Not enough data
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Genome context
chr4: 400890701-400890759 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mdo-mir-1643b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1643b-5p

Accession MIMAT0028598
Description Monodelphis domestica mdo-miR-1643b-5p mature miRNA
Sequence 1 - AUCCUUACUAAGGGCACUUUUUC - 23
Evidence experimental
Illumina [1]

Mature mdo-miR-1643b-3p

Accession MIMAT0028599
Description Monodelphis domestica mdo-miR-1643b-3p mature miRNA
Sequence 37 - AAAAGUGCUGCUAGUGGGGAAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45