miRBase entry: mdo-mir-1643a

Stem-loop mdo-mir-1643a


Accession
MI0023820
Description
Monodelphis domestica mdo-mir-1643a precursor miRNA


Sequence

3330 reads, 63 reads per million, 5 experiments
AUCCUCACUGAGGGCACUUUUUggauguuggcacaaaAAAGGGCUUCUGGUGAGGGUGG
(((((((((((((.(..((((((..........))))))..).)))).)))))))))..

Structure
--         -    G AC      gaug 
  AUCCUCACU GAGG C  UUUUUg    u
  ||||||||| |||| |  ||||||     
  UGGGAGUGG CUUC G  AAaaac    u
GG         U    G GA      acgg 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 400890413-400890471 [-]
Clustered miRNAs
6 other miRNAs are < 10 kb from mdo-mir-1643a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-1643a-5p

Accession MIMAT0028594
Description Monodelphis domestica mdo-miR-1643a-5p mature miRNA
Sequence 1 - AUCCUCACUGAGGGCACUUUUU - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-1643a-3p

Accession MIMAT0028595
Description Monodelphis domestica mdo-miR-1643a-3p mature miRNA
Sequence 38 - AAAGGGCUUCUGGUGAGGGUGG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45