miRBase entry: mdo-mir-34c

Stem-loop mdo-mir-34c


Accession
MI0023815
Description
Monodelphis domestica mdo-mir-34c precursor miRNA
Gene family
MIPF0000039; mir-34


Sequence

667599 reads, 28654 reads per million, 5 experiments
AGGCAGUGUAGUUAGCUGAUUGCuagcaguaguaccAAUCACUAACCACACAGCCAAG
.(((.((((.(((((.(((((((((....)))...))))))))))).)))).)))...

Structure
--A   A    A     C      ---   g 
   GGC GUGU GUUAG UGAUUG   Cua c
   ||| |||| ||||| ||||||   |||  
   CCG CACA CAAUC ACUAAc   gau a
GAA   A    C     -      cau   g 


Annotation confidence High
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Genome context
chr4: 241888509-241888566 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from mdo-mir-34c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-34c-5p

Accession MIMAT0028586
Description Monodelphis domestica mdo-miR-34c-5p mature miRNA
Sequence 1 - AGGCAGUGUAGUUAGCUGAUUGC - 23
Evidence experimental
Illumina [1]
Database links
Predicted targets

Mature mdo-miR-34c-3p

Accession MIMAT0028587
Description Monodelphis domestica mdo-miR-34c-3p mature miRNA
Sequence 37 - AAUCACUAACCACACAGCCAAG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45