miRBase entry: mdo-mir-130b

Stem-loop mdo-mir-130b


Accession
MI0023802
Description
Monodelphis domestica mdo-mir-130b precursor miRNA
Gene family
MIPF0000034; mir-130


Sequence

4558 reads, 68 reads per million, 5 experiments
GCUCUUUCCCUGUUGCCCUGCUguccggucaccuagCAGUGCAAUUGUGAAAGGGCAU
((((((((.(.(((((.((((((...((...)))))))).))))).).))))))))..

Structure
--        C U     C      ucc  u 
  GCUCUUUC C GUUGC CUGCUg   gg  
  |||||||| | ||||| ||||||   || c
  CGGGAAAG G UAACG GACgau   cc  
UA        U U     U      ---  a 


Annotation confidence High
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Genome context
chr3: 511101361-511101418 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdo-mir-130b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdo-miR-130b-5p

Accession MIMAT0028564
Description Monodelphis domestica mdo-miR-130b-5p mature miRNA
Sequence 1 - GCUCUUUCCCUGUUGCCCUGCU - 22
Evidence experimental
Illumina [1]

Mature mdo-miR-130b-3p

Accession MIMAT0028565
Description Monodelphis domestica mdo-miR-130b-3p mature miRNA
Sequence 37 - CAGUGCAAUUGUGAAAGGGCAU - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45