Stem-loop mdo-mir-30b

Accession

MI0023794

Description

Monodelphis domestica mdo-mir-30b precursor miRNA

Gene family

MIPF0000005; mir-30

Sequence

10244 reads, 169 reads per million, 5 experiments

UGUAAACAUCCUACACUCAGCUguaacacauggaucggCUGGGAGGUGGAUGUUUACUUC
.((((((((((.((.((((((((...(....)...))))))))..))))))))))))...

Structure

--U          U  -A        uaa a 
   GUAAACAUCC AC  CUCAGCUg   c c
   |||||||||| ||  ||||||||   |  
   CAUUUGUAGG UG  GGGUCggc   g a
CUU          -  GA        uag u 

Annotation confidence High

Genome context

chr3: 414604734-414604793 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-30b

Mature mdo-miR-30b-5p

• Accession: MIMAT0028550
• Description: Monodelphis domestica mdo-miR-30b-5p mature miRNA
• Sequence: 1 - UGUAAACAUCCUACACUCAGCU - 22
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-30b-3p

• Accession: MIMAT0028551
• Description: Monodelphis domestica mdo-miR-30b-3p mature miRNA
• Sequence: 39 - CUGGGAGGUGGAUGUUUACUUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45