Stem-loop mdo-mir-130c-1

Accession

MI0023774

Description

Monodelphis domestica mdo-mir-130c-1 precursor miRNA

Gene family

MIPF0000034; mir-130

Sequence

4005 reads, 69 reads per million, 5 experiments

GCCCUUUUUAUGUUGUACUACUagugauccugcacaagaagCAGUGCAAUGUUAAAAGGGCAU
((((((((.((((((((((.((.(((......)))....)).)))))))))).))))))))..

Structure

--        U          A  ---a   au 
  GCCCUUUU AUGUUGUACU CU    gug  c
  |||||||| |||||||||| ||    |||   
  CGGGAAAA UGUAACGUGA ga    cac  c
UA        U          C  agaa   gu 

Annotation confidence Not enough data

Genome context

chr2: 172985794-172985856 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-130c-1

Mature mdo-miR-130c-1-5p

• Accession: MIMAT0028514
• Description: Monodelphis domestica mdo-miR-130c-1-5p mature miRNA
• Sequence: 1 - GCCCUUUUUAUGUUGUACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-130c-3p

• Accession: MIMAT0028515
• Description: Monodelphis domestica mdo-miR-130c-3p mature miRNA
• Sequence: 42 - CAGUGCAAUGUUAAAAGGGCAU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45