miRBase entry: dre-mir-7149

Stem-loop dre-mir-7149


Accession
MI0023608
Description
Danio rerio dre-mir-7149 precursor miRNA


Sequence

63 reads, 10 reads per million, 5 experiments
agaaacUGUGAAUCCUACACUGGAAGGuugauguuuuacaguucucUUCCAAGUGUUAUGAGUCAAAGUuucu
(((((((.(((.((..(((((((((((....(((...)))....)))))).)))))...)).))).)))))))

Structure
       G   A  -CU     -      uuga   u 
agaaacU UGA UC   ACACU GGAAGG    ugu  
||||||| ||| ||   ||||| ||||||    ||| u
ucuuUGA ACU AG   UGUGA CCUUcu    aca  
       A   G  UAU     A      cuug   u 


Annotation confidence High
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Genome context
chr23: 24074083-24074155 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dre-mir-7149
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dre-miR-7149-5p

Accession MIMAT0028208
Description Danio rerio dre-miR-7149-5p mature miRNA
Sequence 7 - UGUGAAUCCUACACUGGAAGG - 27
Evidence experimental
Illumina [1]

Mature dre-miR-7149-3p

Accession MIMAT0028209
Description Danio rerio dre-miR-7149-3p mature miRNA
Sequence 47 - UUCCAAGUGUUAUGAGUCAAAGU - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22408181
    Transcriptome-wide analysis of small RNA expression in early zebrafish development
    "Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG"
    "RNA (2012) 18:915-929