Stem-loop sequence dre-mir-7149

Accession

MI0023608 (change log)

Description

Danio rerio miR-7149 stem-loop

Stem-loop

          g   a  -cu     -      uuga  u 
5' agaaacu uga uc   acacu ggaagg    ug u
   ||||||| ||| ||   ||||| ||||||    || u
3' ucuuuga acu ag   uguga ccuucu    ac u
          a   g  uau     a      cuug  a 

Deep sequencing

70 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr23: 24074083-24074155 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dre-mir-7149

• dre-mir-200b: chr23: 24072029-24072110 [+]
• dre-mir-200a: chr23: 24072160-24072245 [+]
• dre-mir-429a: chr23: 24073815-24073896 [+]
• dre-mir-7149: chr23: 24074083-24074155 [+]

Database links

• miRBase Tracker:MI0023608

Mature sequence dre-miR-7149-5p

• Accession: MIMAT0028208
• Sequence: 7 - ugugaauccuacacuggaagg - 27
• Deep sequencing: 47 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence dre-miR-7149-3p

• Accession: MIMAT0028209
• Sequence: 47 - uuccaaguguuaugagucaaagu - 69
• Deep sequencing: 23 reads, 4 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22408181 "Transcriptome-wide analysis of small RNA expression in early zebrafish development" Wei C, Salichos L, Wittgrove CM, Rokas A, Patton JG RNA. 18:915-929(2012).