miRBase entry: hcmv-mir-US22

Stem-loop hcmv-mir-US22


Accession
MI0023578
Description
Human cytomegalovirus hcmv-mir-US22 precursor miRNA


Sequence

ggggaccUGUUUCAGCGUGUGUCCGCGGGcgugcauggcuuuugcUCGCCGGCCGCGCUGUAACCAGGccuc
((((.((((.(((((((((.(((.(((((((.((...))...))))))).)))))))))).)).))))))))

Structure
    a    U  -       U   C       --u  a 
gggg ccUG UU CAGCGUG GUC GCGGGcg   gc  
|||| |||| || ||||||| ||| |||||||   || u
cucc GGAC AA GUCGCGC CGG CGCUcgu   cg  
    -    C  U       -   C       uuu  g 


Annotation confidence Not enough data
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Genome context
HEHCMVCG: 209922-209993 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from hcmv-mir-US22
Name Accession Chromosome Start End Strand Confidence




Disease association
hcmv-mir-US22 is associated with one or more human diseases in the Human microRNA Disease Database
Disease Description Category PubMed ID


Database links

Mature hcmv-miR-US22-5p

Accession MIMAT0028165
Description Human cytomegalovirus hcmv-miR-US22-5p mature miRNA
Sequence 8 - UGUUUCAGCGUGUGUCCGCGGG - 29
Evidence experimental
Illumina [1]

Mature hcmv-miR-US22-3p

Accession MIMAT0028166
Description Human cytomegalovirus hcmv-miR-US22-3p mature miRNA
Sequence 46 - UCGCCGGCCGCGCUGUAACCAGG - 68
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22013051
    High-resolution profiling and analysis of viral and host small RNAs during human cytomegalovirus infection
    "Stark TJ, Arnold JD, Spector DH, Yeo GW"
    "J Virol (2012) 86:226-235