Stem-loop sequence ssc-mir-7136

Accession

MI0023569 (change log)

Description

Sus scrofa miR-7136 stem-loop

Literature search

1 open access papers mention ssc-mir-7136
(3 sentences)

Stem-loop

   ---      c         u    c  aa a 
5'    ucuggu cagacacug ggag ug  g g
      |||||| ||||||||| |||| ||  |  
3'    agacca guuugugac cuuc ac  c a
   cga      a         u    -  aa c 

Deep sequencing

7 reads, 0 reads per million, 4 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (Sscrofa10.2; GCA_000003025.4)	Overlapping transcripts
chr7: 8701439-8701498 [+]	intergenic
chrUScaf1148: 53415-53474 [+]	intergenic

Database links

• miRBase Tracker:MI0023569

Mature sequence ssc-miR-7136-5p

• Accession: MIMAT0028147
• Sequence: 1 - ucugguccagacacuguggagc - 22
• Deep sequencing: 1 reads, 1 experiments
• Evidence: experimental; Illumina [1]

Mature sequence ssc-miR-7136-3p

• Accession: MIMAT0028148
• Sequence: 39 - ucucaguguuugaaccagaagc - 60
• Deep sequencing: 5 reads, 3 experiments
• Evidence: experimental; Illumina [1]

References

1. PMID:22953717 "Profiling microRNAs in lung tissue from pigs infected with Actinobacillus pleuropneumoniae" Podolska A, Anthon C, Bak M, Tommerup N, Skovgaard K, Heegaard PM, Gorodkin J, Cirera S, Fredholm M BMC Genomics. 13:459(2012).