Stem-loop sequence bfl-mir-4900a-2

Accession

MI0023544 (change log)

Description

Branchiostoma floridae miR-4900a-2 stem-loop

Gene family

MIPF0001224; mir-4900

Stem-loop

   gcu   a  u       c ug  a     c   ga   
5'    aag gu uuucuuc u  gc cagcu ugu  ca 
      ||| || ||||||| |  || ||||| |||  | g
3'    uuc cg aaagaag g  cg gucga aca  gu 
   acc   c  u       c gu  -     u   ag   

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JGI2; GCF_000003815.1): GG666468.1: 2419551-2419624 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from bfl-mir-4900a-2

• bfl-mir-4900b-1: GG666468.1: 2410560-2410648 [+]
• bfl-mir-4900a-1: GG666468.1: 2410817-2410890 [+]
• bfl-mir-4900b-2: GG666468.1: 2419298-2419386 [+]
• bfl-mir-4900a-2: GG666468.1: 2419551-2419624 [+]

Database links

• miRBase Tracker:MI0023544

Mature sequence bfl-miR-4900a

• Accession: MIMAT0020492
• Sequence: 46 - uagcuggcuggcgaagaaaugc - 67
• Evidence: experimental; 454 [1]

References

1. PMID:21210939 "microRNA complements in deuterostomes: origin and evolution of microRNAs" Campo-Paysaa F, Semon M, Cameron RA, Peterson KJ, Schubert M Evol Dev. 13:15-27(2011).