miRBase entry: sbi-MIR6235

Stem-loop sbi-MIR6235


Accession
MI0023540
Description
Sorghum bicolor sbi-MIR6235 precursor miRNA

Literature search
1 open access papers mention sbi-MIR6235
(1 sentences)

Sequence

uguuuacuaauuuaUUGUGAGAGAAAAAUACUGUUGGCuggcagaaaaaguauggcacaaguauggcacagucuuguucauuugucuuauaagccguauuuuuuuuugucAACGAACAGUAUUUUUCUCUUACAauaaaaucagcgaaca
(((((.((..(((((((((((((((((((((((((.(.((((((((((((((((((((((((..((((......)))).)))))).......)))))).)))))))))))).).)))))))))))))))))))))))))...)).)))))

Structure
     a  -aa                         G C            -      -------      au    ca 
uguuu cu   uuuaUUGUGAGAGAAAAAUACUGUU G uggcagaaaaag uauggc       acaagu  ggca  g
||||| ||   ||||||||||||||||||||||||| | |||||||||||| ||||||       ||||||  ||||   
acaag ga   aaauaACAUUCUCUUUUUAUGACAA C Acuguuuuuuuu augccg       uguuua  uugu  u
     c  cua                         G A            u      aauauuc      -c    uc 


Annotation confidence Not enough data
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Genome context
chr7: 8666285-8666434 [+]

Database links

Mature sbi-miR6235-5p

Accession MIMAT0026454
Description Sorghum bicolor sbi-miR6235-5p mature miRNA
Sequence 15 - UUGUGAGAGAAAAAUACUGUUGGC - 38
Evidence not_experimental

Mature sbi-miR6235-3p

Accession MIMAT0026455
Description Sorghum bicolor sbi-miR6235-3p mature miRNA
Sequence 111 - AACGAACAGUAUUUUUCUCUUACA - 134
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290