miRBase entry: sbi-MIR6233

Stem-loop sbi-MIR6233


Accession
MI0023537
Description
Sorghum bicolor sbi-MIR6233 precursor miRNA


Sequence

cacagaugcaacuagccacuggugaUGUUGAGGCUGGAGCGAAACUCGGugaaggucgaggacgggagacccuuggugaagauguuggccCAAGUUUGGUUUUGGUAAUUAAUGacaccaaguugcuaaugcuuugug
((((((.(((..((((.(((((((..(((((.((((((((.(((((.(((.((.(((.....((((.....)))).....))).)).)))..))))).))))))))..)))))..)))).))).)))).)))))))))

Structure
      u   ac    c   -    aU     -G        G     -C   g  g   gagga    a 
cacaga gca  uagc acu ggug  GUUGA  GCUGGAGC AAACU  GGu aa guc     cggg g
|||||| |||  |||| ||| ||||  |||||  |||||||| |||||  ||| || |||     |||| a
guguuu cgu  aucg uga ccac  UAAUU  UGGUUUUG UUUGA  ccg uu uag     guuc c
      -   -a    u   a    aG     AA        G     AC   g  g   aagug    c 


Annotation confidence Not enough data
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Genome context
chr4: 19698132-19698269 [+]

Database links

Mature sbi-miR6233-5p

Accession MIMAT0026448
Description Sorghum bicolor sbi-miR6233-5p mature miRNA
Sequence 26 - UGUUGAGGCUGGAGCGAAACUCGG - 49
Evidence not_experimental

Mature sbi-miR6233-3p

Accession MIMAT0026449
Description Sorghum bicolor sbi-miR6233-3p mature miRNA
Sequence 91 - CAAGUUUGGUUUUGGUAAUUAAUG - 114
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290