miRBase entry: sbi-MIR6232b

Stem-loop sbi-MIR6232b


Accession
MI0023536
Description
Sorghum bicolor sbi-MIR6232b precursor miRNA


Sequence

ugagaugaaagggauaagguaauaugauaauacucgaucuguuucgaauuauaagucgaguugauuUUUUUGGUACAUUGAAUUUGCaauguauguagacuagcaAAUUCGAUGUACCAAAAAAGUcaaacugacuuauaauuugaugaaauggauggaguacuaaagaauaguugccucccauugcuua
..........((((...((((((((..((.(((((.((((((((((((((((((((((..(((((((((((((((((((((((((((...((......))..)))))))))))))))))))))))))))..)))))))))))))...))))))))).))))).))....)).))))))))))........

Structure
ugagaugaaa    uaa      -  --ga  a     g         ---             ag                           aau  au 
          ggga   gguaau au    ua uacuc aucuguuuc   gaauuauaagucg  uugauuUUUUUGGUACAUUGAAUUUGC   gu  g
          ||||   |||||| ||    || ||||| |||||||||   |||||||||||||  |||||||||||||||||||||||||||   ||   
          cccu   ccguug ua    au augag uagguaaag   uuuaauauucagu  aacUGAAAAAACCAUGUAGCUUAAacg   ca  u
--auucguua    ---      a  agaa  c     g         uag             ca                           -au  ga 


Annotation confidence Not enough data
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Genome context
chr4: 1616754-1616943 [+]

Database links

Mature sbi-miR6232b-5p

Accession MIMAT0026446
Description Sorghum bicolor sbi-miR6232b-5p mature miRNA
Sequence 67 - UUUUUGGUACAUUGAAUUUGC - 87
Evidence not_experimental

Mature sbi-miR6232b-3p

Accession MIMAT0026447
Description Sorghum bicolor sbi-miR6232b-3p mature miRNA
Sequence 106 - AAUUCGAUGUACCAAAAAAGU - 126
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290