miRBase entry: sbi-MIR5568f

Stem-loop sbi-MIR5568f


Accession
MI0023534
Description
Sorghum bicolor sbi-MIR5568f precursor miRNA
Gene family
MIPF0001377; MIR5568

Literature search
2 open access papers mention sbi-MIR5568f
(3 sentences)

Sequence

guauuacuccaUCCAUUCCAAAUUGUAAGAUGuuuuggcuuuuccagauauacacuaugucuagauacauaguaaaagaaauguaucuagaaaaacucaaauGUCUUAUAAUUUGGAAUGGAGagaguagcuuguac
...((((((..((((((((((((((((((((((((.((.(((((.(((((((.(((((((......)))))))........))))))).))))).)).))))))))))))))))))))))))..)))))).......

Structure
----gua      ca                        u  c     c       -------c       cu 
       uuacuc  UCCAUUCCAAAUUGUAAGAUGuuu gg uuuuc agauaua        acuaugu  a
       ||||||  |||||||||||||||||||||||| || ||||| |||||||        |||||||   
       gaugag  AGGUAAGGUUUAAUAUUCUGuaaa uc aaaag ucuaugu        ugauaca  g
cauguuc      aG                        c  a     a       aaagaaaa       ua 


Annotation confidence Not enough data
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Genome context
chr4: 63095416-63095552 [-]

Database links

Mature sbi-miR5568f-5p

Accession MIMAT0026442
Description Sorghum bicolor sbi-miR5568f-5p mature miRNA
Sequence 12 - UCCAUUCCAAAUUGUAAGAUG - 32
Evidence not_experimental

Mature sbi-miR5568f-3p

Accession MIMAT0026443
Description Sorghum bicolor sbi-miR5568f-3p mature miRNA
Sequence 103 - GUCUUAUAAUUUGGAAUGGAG - 123
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290