miRBase entry: sbi-MIR6225

Stem-loop sbi-MIR6225


Accession
MI0023523
Description
Sorghum bicolor sbi-MIR6225 precursor miRNA

Literature search
1 open access papers mention sbi-MIR6225
(2 sentences)

Sequence

uaaucauguacuAACUAGACUCAAAAGAUUCAUCUCccgauuuauagauaaauugugcaauuaguuuuuguuuuugucuauauuuaaugcuucacgcaugugcuguaaaauucgauaugaagggaaaucuugaaaaguuuuugguacuuuuugaaaacuacccaaaacuuuucaagauuucccaucauaaugaaucuuacggcacaugcauuaaacacuaaauauagaugaaaauaaaaacuaauuauauaauuugucuguaauuugcGAAACGAAUCUUUUAAGUCUAAUUaaauuauuauua
...........(((.((((((.(((((((((...((.(((.((((((((((((((((.((((((((((((((((((((((((((((.((......(((((((((((((.(((((.(((((.((((((((((((((((((((.((((.(((....))).)))).)))))))))))))))))))).))))).))))).)))))))))))))......)).)))))))))))))))))))))))))))).)))))))))))))))).))).))...))))))))).)))))).)))...........

Structure
uaaucauguac   C      C         AUC  c   u                c                            a  cuucac             a     a     a                    u    c   u 
           uAA UAGACU AAAAGAUUC   UC cga uuauagauaaauugug aauuaguuuuuguuuuugucuauauuua ug      gcaugugcuguaa auucg uauga gggaaaucuugaaaaguuuu ggua uuu u
           ||| |||||| |||||||||   || ||| |||||||||||||||| |||||||||||||||||||||||||||| ||      ||||||||||||| ||||| ||||| |||||||||||||||||||| |||| |||  
           aUU AUCUGA UUUUCUAAG   AG guu aaugucuguuuaauau uuaaucaaaaauaaaaguagauauaaau ac      cguacacggcauu uaagu auacu cccuuuagaacuuuucaaaa ccau aaa g
auuauuauuaa   A      A         CAA  c   u                a                            c  aaauua             c     a     a                    c    c   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr3: 10003904-10004207 [-]

Database links

Mature sbi-miR6225-5p

Accession MIMAT0026420
Description Sorghum bicolor sbi-miR6225-5p mature miRNA
Sequence 13 - AACUAGACUCAAAAGAUUCAUCUC - 36
Evidence not_experimental

Mature sbi-miR6225-3p

Accession MIMAT0026421
Description Sorghum bicolor sbi-miR6225-3p mature miRNA
Sequence 269 - GAAACGAAUCUUUUAAGUCUAAUU - 292
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290