miRBase entry: sbi-MIR6224c

Stem-loop sbi-MIR6224c


Accession
MI0023522
Description
Sorghum bicolor sbi-MIR6224c precursor miRNA
Gene family
MIPF0001435; MIR6224


Sequence

ucauuuuugucuuguaguagacauacuccCUCCGUCCUAAUAUAUAAGGCguaaccacuuuuuguucauaucucauaauauaaggcgugcucucucacaaacauuaauguagcacuauuagugcugagagggagagaauuaaauacguucuuggucuuugaaucaaaggguacgcCUUAUAUACUAGGACGGAGGGaguauaugcuaaagaugagcuauga
((((.((((((((.(((((...(((((((((((((((((.(((((((((((((.((.((((..(((((.............(((((...((((((((....((((((((......)))))))).)))))))).((((((.......)))))).)))))))))).))))))))))))))))))).))))))))))))))))).)))))))))))))..))))

Structure
    -u        g     gac                 A             a  a    uu     uaucucauaauau     ------------------gug        caaa        ua 
ucau  uuugucuu uagua   auacuccCUCCGUCCUA UAUAUAAGGCgua cc cuuu  guuca             aaggc                     cucucuca    cauuaaug  g
||||  |||||||| |||||   ||||||||||||||||| ||||||||||||| || ||||  |||||             |||||                     ||||||||    ||||||||   
agua  gaguagaa aucgu   uaugaGGGAGGCAGGAU AUAUAUUCcgcau gg gaaa  uaagu             uucug                     gggagagu    gugauuau  c
    uc        -     --a                 C             -  -    -c     -------------     guucuugcauaaauuaagaga        ---c        ca 


Annotation confidence Not enough data
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Genome context
chr4: 7056702-7056922 [-]

Database links

Mature sbi-miR6224c-5p

Accession MIMAT0026418
Description Sorghum bicolor sbi-miR6224c-5p mature miRNA
Sequence 30 - CUCCGUCCUAAUAUAUAAGGC - 50
Evidence not_experimental

Mature sbi-miR6224c-3p

Accession MIMAT0026419
Description Sorghum bicolor sbi-miR6224c-3p mature miRNA
Sequence 176 - CUUAUAUACUAGGACGGAGGG - 196
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290