miRBase entry: sbi-MIR6224b

Stem-loop sbi-MIR6224b


Accession
MI0023521
Description
Sorghum bicolor sbi-MIR6224b precursor miRNA
Gene family
MIPF0001435; MIR6224


Sequence

cucuCUCCGUCCUAAUAUAUAAGGCgcaaucacuuuuuauuuauaucccauaauauaauagcucucucucauacaucaauacaguaguacuaguauugagagagaauuaaauaugaucuugauuuuugaaccaaagguaguuaagcCUUAUAUACUAGGACGGAGGGag
((((((((((((((.((((((((((..(((.((((((..((((.(((.....((((..(((.((((((((((((.....(((....)))...))).))))))))).))).))))......)))...))))..)))))).)))..)))))))))).))))))))))))))

Structure
              A          gc   c      ua    --u   -ccaua    aa   c         -   aucaa   a 
cucuCUCCGUCCUA UAUAUAAGGC  aau acuuuu  uuua   auc      auau  uag ucucucuca uac     uac g
|||||||||||||| ||||||||||  ||| ||||||  ||||   |||      ||||  ||| ||||||||| |||     |||  
gaGGGAGGCAGGAU AUAUAUUCcg  uug uggaaa  aagu   uag      uaua  auu agagagagu aug     aug u
              C          aa   a      cc    uuu   uucuag    -a   a         u   --auc   a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr4: 279105-279273 [-]

Database links

Mature sbi-miR6224b-5p

Accession MIMAT0026416
Description Sorghum bicolor sbi-miR6224b-5p mature miRNA
Sequence 5 - CUCCGUCCUAAUAUAUAAGGC - 25
Evidence not_experimental

Mature sbi-miR6224b-3p

Accession MIMAT0026417
Description Sorghum bicolor sbi-miR6224b-3p mature miRNA
Sequence 147 - CUUAUAUACUAGGACGGAGGG - 167
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290