miRBase entry: sbi-MIR437x

Stem-loop sbi-MIR437x


Accession
MI0023516
Description
Sorghum bicolor sbi-MIR437x precursor miRNA
Gene family
MIPF0000746; MIR437

Literature search
3 open access papers mention sbi-MIR437x
(5 sentences)

Sequence

uacucccuccgucacugaaagcuguaauuucUAGAGUUGUCCUAAGUCAAACUUUuacaacuuugaucaaauuuauagaaaaaaaugcuaagauuuauaguaccaaaauaauaccauuaaauuuauuauagaauauauuuuuaaaauauacuuauuuuaugucauagauauugauacucuuuuuuauaaaauuagucaaaguuaaaaaaAUUUGACUGACACGGAUUCUAGGAguugaagcuuucggagacggagggagua
(((((((((((((.(((((((((.((((((((((((((......(((((((.((((..(((((((((.((.(((((((((((...(((((.......))))).....((((((..........))))))............(((((((....)))))))(((((.......)))))...))))))))))).)).)))))))))..)))).)))))))......)))))))))))))).))))))))).)))))))))))))

Structure
             a         g              GUCCUA       C    ac         c  a           aaaugcuaagauuuauaguaccaaaauaauaccauuaaauuuauuauagaauauauuuu       u 
uacucccuccguc cugaaagcu uaauuucUAGAGUU      AGUCAAA UUUu  aacuuugau aa uuuauagaaaa                                                           uaaaaua a
||||||||||||| ||||||||| ||||||||||||||      ||||||| ||||  ||||||||| || |||||||||||                                                           |||||||  
augagggaggcag ggcuuucga guugAGGAUCUUAG      UCAGUUU aaaa  uugaaacug uu aaauauuuuuu                                                           auuuuau c
             a         a              GCACAG       A    aa         a  a           ---------------------------------------cucauaguuauagauacugu       u 


Annotation confidence Not enough data
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Genome context
chr1: 21931891-21932151 [+]

Database links

Mature sbi-miR437x-5p

Accession MIMAT0026406
Description Sorghum bicolor sbi-miR437x-5p mature miRNA
Sequence 32 - UAGAGUUGUCCUAAGUCAAACUUU - 55
Evidence not_experimental

Mature sbi-miR437x-3p

Accession MIMAT0026407
Description Sorghum bicolor sbi-miR437x-3p mature miRNA
Sequence 210 - AUUUGACUGACACGGAUUCUAGGA - 233
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290