miRBase entry: sbi-MIR6220

Stem-loop sbi-MIR6220


Accession
MI0023515
Description
Sorghum bicolor sbi-MIR6220 precursor miRNA

Literature search
1 open access papers mention sbi-MIR6220
(1 sentences)

Sequence

ggccaugcugucgaacauauuacucuCUCCAUCCUAAAUUAUAAGACAUUauaagaauccuagauagucaaaguaugacaaauuugaccaaauuuauauaauaaaauaauaacauuuaugauacuaacuaaacaucauuagauucuucuuuaauuauauuuuauaguauaucuacuugaucucauaaguuuuuauauuuuucuauaauuuugguuaaacuugagauaauuugauucucuaaguuuuuugaaAUGCCUUAUAAUUUGGGAUGGAGAgagcuuuuuuuauuguuaaaguagugcc
(((..((((....((((.....(((((((((((((((((((((((.((((.((((((.(.((((.(((((((.(((..(((.((((((((((.(((((....((((((..((.((((((((............((((.(((((....((.(((.......))).))...)))))..)))).)))))))).))..))))))..))))).)))))))))).)))..))).))))))).)))).).)))))).)))).)))))))))))))))))))))))..........))))..))))..)))

Structure
   ca    gucg    -----uauua                       A    a      u c    u       g   ga   a          u     uaau      au  c        uacuaacuaaac    -u     ucuu  u   uu 
ggc  ugcu    aaca          cucuCUCCAUCCUAAAUUAUAAG CAUU uaagaa c uaga agucaaa uau  caa uuugaccaaa uuaua    aaaaua  aa auuuauga            auca  uagau    cu uaa  a
|||  ||||    ||||          ||||||||||||||||||||||| |||| |||||| | |||| ||||||| |||  ||| |||||||||| |||||    ||||||  || ||||||||            ||||  |||||    || |||  u
ccg  auga    uugu          gagAGAGGUAGGGUUUAAUAUUC GUAa guuuuu g aucu uuaguuu aua  guu aaauugguuu aauau    uuuuau  uu ugaauacu            uagu  aucua    ga auu  a
   ug    --aa    uauuuuuuuc                       C    a      u a    c       a   ga   c          u     --cu      au  u        -----------c    uc     -uau  u   uu 


Annotation confidence Not enough data
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Genome context
chr6: 60205272-60205574 [-]

Database links

Mature sbi-miR6220-5p

Accession MIMAT0026404
Description Sorghum bicolor sbi-miR6220-5p mature miRNA
Sequence 27 - CUCCAUCCUAAAUUAUAAGACAUU - 50
Evidence not_experimental

Mature sbi-miR6220-3p

Accession MIMAT0026405
Description Sorghum bicolor sbi-miR6220-3p mature miRNA
Sequence 252 - AUGCCUUAUAAUUUGGGAUGGAGA - 275
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290