miRBase entry: sbi-MIR5565g

Stem-loop sbi-MIR5565g


Accession
MI0023511
Description
Sorghum bicolor sbi-MIR5565g precursor miRNA
Gene family
MIPF0001279; MIR5565


Sequence

gggcuuguuuggauguagucggaUUCACAUCAAUCCACAUAUGUUGGaauggguuggaguguaauuugaacuaaauuccaccucaauccacuucaACACAUGUGGAUUGAGAUGAAUACgauaacauccaaacaaccggucu
.((.((((((((((((.((((..((((..(((((((((((.(((((((.((((((((.(((.((((((...)))))).))).)))))))).))))))).)))))))))))..))))..)))).)))))))))))))).....

Structure
----g  c            a    ga    CA           A       a        a   u      a 
     gg uuguuuggaugu gucg  UUCA  UCAAUCCACAU UGUUGGa uggguugg gug aauuug  
     || |||||||||||| ||||  ||||  ||||||||||| ||||||| |||||||| ||| |||||| a
     cc aacaaaccuaca uagC  AAGU  AGUUAGGUGUA ACAacuu accuaacu cac uuaaau  
ucugg  -            a    AU    AG           C       c        c   c      c 


Annotation confidence Not enough data
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Genome context
chr8: 55678339-55678480 [+]

Database links

Mature sbi-miR5565g-5p

Accession MIMAT0026398
Description Sorghum bicolor sbi-miR5565g-5p mature miRNA
Sequence 24 - UUCACAUCAAUCCACAUAUGUUGG - 47
Evidence not_experimental

Mature sbi-miR5565g-3p

Accession MIMAT0026399
Description Sorghum bicolor sbi-miR5565g-3p mature miRNA
Sequence 96 - ACACAUGUGGAUUGAGAUGAAUAC - 119
Evidence not_experimental

References

  1. PubMed ID: 22747909
    Computational identification and analysis of novel sugarcane microRNAs
    Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC
    BMC Genomics (2012) 13:290