miRBase entry: bma-mir-5882b-1

Stem-loop bma-mir-5882b-1

Accession

MI0023499

Description

Brugia malayi bma-mir-5882b-1 precursor miRNA

Gene family

MIPF0001418; mir-5882

Sequence

ugucaugaauaugcacuguccugauuacccacagcauaucuugucgUGGGCAACCAGAAUAAUGCAUAGUuaugacaguc
((((((((.((((((.(((.(((.((.(((((.(((.....))).))))).)).))).))).)))))).))))))))...

Structure

---        a      c   c   a  a     a   u 
   ugucauga uaugca ugu cug uu cccac gca a
   |||||||| |||||| ||| ||| || ||||| ||| u
   acaguauU AUACGU AUA GAC AA GGGUg ugu c
cug        G      A   A   C  C     c   u

Annotation confidence Not enough data

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Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold129: 20824-20903 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5882b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5882b

Accession	MIMAT0026386
Description	Brugia malayi bma-miR-5882b mature miRNA
Sequence	47 - UGGGCAACCAGAAUAAUGCAUAGU - 70
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4