miRBase entry: bma-mir-5882a-1

Stem-loop bma-mir-5882a-1


Accession
MI0023496
Description
Brugia malayi bma-mir-5882a-1 precursor miRNA
Gene family
MIPF0001418; mir-5882


Sequence

agcaucggugacugucauaacuaugcauuauucugguugcccacgacaagauaugcugUGGGUAAUCAGGACAGUGCAUAUucaugacaccaacucacuguuucg
.....((((((.((((((...((((((((.(((((((((((((((.((.....)).))))))))))))))).))))))))...)))))).....)))))).....

Structure
agcau      ----c      aac        a               a  a 
     cgguga     ugucau   uaugcauu uucugguugcccacg ca g
     ||||||     ||||||   |||||||| ||||||||||||||| || a
     gucacu     acagua   AUACGUGA AGGACUAAUGGGUgu gu u
gcuuu      caacc      cuU        C               c  a 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold129: 20808-20912 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5882a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5882a

Accession MIMAT0026385
Description Brugia malayi bma-miR-5882a mature miRNA
Sequence 59 - UGGGUAAUCAGGACAGUGCAUAU - 81
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498