miRBase entry: bma-mir-5881a

Stem-loop bma-mir-5881a


Accession
MI0023493
Description
Brugia malayi bma-mir-5881a precursor miRNA
Gene family
MIPF0001420; mir-5881


Sequence

aguaacuuaaAAUCGGACAACUACGACACUAAGGgcgcaaaagucgcccuuagugucguaguuguccuaauuucaauccu
..............((((((((((((((((((((((((....).))))))))))))))))))))))).............

Structure
aguaacuuaaAAUC                       - a 
              GGACAACUACGACACUAAGGgcg c a
              ||||||||||||||||||||||| |  
              ccuguugaugcugugauucccgc g a
-uccuaacuuuaau                       u a 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold4: 1450466-1450545 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5881a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5881a

Accession MIMAT0026382
Description Brugia malayi bma-miR-5881a mature miRNA
Sequence 11 - AAUCGGACAACUACGACACUAAGG - 34
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4