miRBase entry: bma-mir-5879b

Stem-loop bma-mir-5879b

Accession

MI0023490

Description

Brugia malayi bma-mir-5879b precursor miRNA

Gene family

MIPF0001472; mir-5879

Sequence

aaacaaccuaGCAGGAAAGACUCAACUAUGUgcaucuauaucuacgcauaguugagucuuuucugcuagacugauu
.......(((((((((((((((((((((((((............))))))))))))))))))))))))).......

Structure

aaacaac                         caucu 
       cuaGCAGGAAAGACUCAACUAUGUg     a
       |||||||||||||||||||||||||      
       gaucgucuuuucugaguugauacgc     u
uuaguca                         aucua

Annotation confidence Not enough data

Do you think this miRNA is real?

Comments

This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context

Bmal_v3_scaffold158: 22879-22954 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from bma-mir-5879b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature bma-miR-5879b

Accession	MIMAT0026379
Description	Brugia malayi bma-miR-5879b mature miRNA
Sequence	11 - GCAGGAAAGACUCAACUAUGU - 31
Evidence	not_experimental

References

PubMed ID: 22216965
Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
BMC Genomics (2012) 13:4