miRBase entry: bma-mir-5865

Stem-loop bma-mir-5865


Accession
MI0023467
Description
Brugia malayi bma-mir-5865 precursor miRNA


Sequence

aaguaauacgaaguucaucaaaaguccauggcacugugaaaaguuggggucacaguaacugugauguugucauUCUAACUUUCAUUGUGCUAUGGAuuucugaugaccaauaaagcauaucguuggauaag
..............((((((.(((((((((((((.((((((.(((((((((((((...)))))))........)))))))))))).))))))))))))).))))))(((((..........))))).....

Structure
-----------aaguaauacgaagu      a             u      a      --------       u 
                         ucauca aaguccauggcac gugaaa guuggg        gucacag  
                         |||||| ||||||||||||| |||||| ||||||        ||||||| a
                         aguagu uuuAGGUAUCGUG UACUUU CAAUCU        uaguguc  
gaauagguugcuauacgaaauaacc      c             U      -      uacuguug       a 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold148: 20001-20131 [+]

Database links

Mature bma-miR-5865

Accession MIMAT0026364
Description Brugia malayi bma-miR-5865 mature miRNA
Sequence 74 - UCUAACUUUCAUUGUGCUAUGGA - 96
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4