miRBase entry: bma-mir-2g

Stem-loop bma-mir-2g


Accession
MI0023459
Description
Brugia malayi bma-mir-2g precursor miRNA

Literature search
3 open access papers mention bma-mir-2g
(30 sentences)

Sequence

auacaaguuuagcAUAUCACAAACAAAAUUCUGGaagugugccAGAAUUUUGUUUGUGAUAAGAUaaauuugcaa
...((((((((.(.((((((((((((((((((((.......)))))))))))))))))))).).))))))))...

Structure
aua        g A                    aa 
   caaguuua c UAUCACAAACAAAAUUCUGG  g
   |||||||| | ||||||||||||||||||||  u
   guuuaaaU G AUAGUGUUUGUUUUAAGAcc  g
aac        A A                    gu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold6: 1487667-1487741 [-]

Database links

Mature bma-miR-2g-3p

Accession MIMAT0026359
Description Brugia malayi bma-miR-2g-3p mature miRNA
Sequence 44 - AGAAUUUUGUUUGUGAUAAGAU - 65
Evidence not_experimental

Mature bma-miR-2g-5p

Accession MIMAT0037482
Description Brugia malayi bma-miR-2g-5p mature miRNA
Sequence 14 - AUAUCACAAACAAAAUUCUGG - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498