miRBase entry: bma-mir-5859

Stem-loop bma-mir-5859


Accession
MI0023458
Description
Brugia malayi bma-mir-5859 precursor miRNA


Sequence

aagucuuaacUUAGGAAUUGUUGGAGAUCGGCUUcuuuguuucggauuccugauuuccaacaauuucuuauuuuugauuuu
(((((..((...(((((((((((((((((((..(((.......)))..)).)))))))))))))))))...))..))))).

Structure
-     uu  cUU                 -  CU   uu 
 aaguc  aa   AGGAAUUGUUGGAGAUC GG  Ucu  g
 |||||  ||   ||||||||||||||||| ||  |||  u
 uuuag  uu   ucuuuaacaaccuuuag cc  agg  u
u     uu  uau                 u  uu   cu 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold8: 1096279-1096359 [+]

Database links

Mature bma-miR-5859

Accession MIMAT0026358
Description Brugia malayi bma-miR-5859 mature miRNA
Sequence 11 - UUAGGAAUUGUUGGAGAUCGGCUU - 34
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4