miRBase entry: bma-mir-5856a

Stem-loop bma-mir-5856a


Accession
MI0023454
Description
Brugia malayi bma-mir-5856a precursor miRNA
Gene family
MIPF0001503; mir-5856


Sequence

gcuaauagaagcaacucuguguguagcauucgguauacacucucauaCCGAAUGCUACACACGGAGUUGCuucuugauuu
......((((((((((((((((((((((((((((((........))))))))))))))))))))))))))))))......

Structure
gcuaau                              aca 
      agaagcaacucuguguguagcauucgguau   c
      ||||||||||||||||||||||||||||||    
      ucuuCGUUGAGGCACACAUCGUAAGCCaua   u
uuuagu                              cuc 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold2: 198264-198343 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from bma-mir-5856a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bma-miR-5856a

Accession MIMAT0026354
Description Brugia malayi bma-miR-5856a mature miRNA
Sequence 48 - CCGAAUGCUACACACGGAGUUGC - 70
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4