miRBase entry: bma-mir-5848

Stem-loop bma-mir-5848


Accession
MI0023446
Description
Brugia malayi bma-mir-5848 precursor miRNA


Sequence

uuuuuugauaugaaauguucaugucuauucugauacuguaugacagUAGGAUAGACAUGAACAUUUUGuaucaaaaag
.((((((((((((((((((((((((((((((...(((((...))))))))))))))))))))))))))))))))))).

Structure
u                              gau     a 
 uuuuugauaugaaauguucaugucuauucu   acugu  
 ||||||||||||||||||||||||||||||   ||||| u
 aaaaacuauGUUUUACAAGUACAGAUAGGA   Ugaca  
g                              ---     g 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold110: 45475-45552 [+]

Database links

Mature bma-miR-5848

Accession MIMAT0026346
Description Brugia malayi bma-miR-5848 mature miRNA
Sequence 47 - UAGGAUAGACAUGAACAUUUUG - 68
Evidence not_experimental

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4