miRBase entry: bma-mir-5838-1

Stem-loop bma-mir-5838-1


Accession
MI0023433
Description
Brugia malayi bma-mir-5838-1 precursor miRNA
Gene family
MIPF0002115; mir-5838

Literature search
1 open access papers mention bma-mir-5838-1
(3 sentences)

Sequence

aauaacaaauguccggcuacguUGCUAAACCGUAAAUGCUCCUAauguuuuuaauaauaaucuaUGAGUAUUUUCGGUUUCGCAUCcuagcaggaacaaauggcggau
.....((..(((((.((((.(.(((.((((((.((((((((.((.((((......))))...)).)))))))).)))))).))).).)))).)).)))..))......

Structure
-aauaa  aa   -  g    c u   U      U        C  --a    uu 
      ca  ugu cc gcua g UGC AAACCG AAAUGCUC UA   uguu  u
      ||  ||| || |||| | ||| |||||| |||||||| ||   ||||   
      gu  aca gg cgau C ACG UUUGGC UUUAUGAG au   auaa  a
uaggcg  aa   a  a    c U   C      U        U  cua    ua 


Annotation confidence Not enough data
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Comments
This microRNA was experimentally validated from deep sequencing libraries in the closely related species Brugia pahangi [1].

Genome context
Bmal_v3_scaffold316: 10123-10230 [+]

Database links

Mature bma-miR-5838-3p

Accession MIMAT0026336
Description Brugia malayi bma-miR-5838-3p mature miRNA
Sequence 65 - UGAGUAUUUUCGGUUUCGCAUC - 86
Evidence not_experimental

Mature bma-miR-5838-5p

Accession MIMAT0037476
Description Brugia malayi bma-miR-5838-5p mature miRNA
Sequence 23 - UGCUAAACCGUAAAUGCUCCUA - 44
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22216965
    Diversity in parasitic nematode genomes: the microRNAs of Brugia pahangi and Haemonchus contortus are largely novel
    Winter AD, Weir W, Hunt M, Berriman M, Gilleard JS, Devaney E, Britton C
    BMC Genomics (2012) 13:4

  2. PubMed ID: 24824352
    Diversity and expression of microRNAs in the filarial parasite, Brugia malayi
    Poole CB, Gu W, Kumar S, Jin J, Davis PJ, Bauche D, McReynolds LA
    PLoS One (2014) 9:e96498