miRBase entry: ccr-mir-301a

Stem-loop ccr-mir-301a


Accession
MI0023388
Description
Cyprinus carpio ccr-mir-301a precursor miRNA
Gene family
MIPF0000034; mir-130

Literature search
1 open access papers mention ccr-mir-301a
(3 sentences)

Sequence

acaucaagugcuguuaacaggugcucugacuucauugcacuacuguauuggacagcuagCAGUGCAAUAGUAUUGUCAAAGCaucugagagcagc
.........((((((..((((((((.((((..(((((((((.((((........)).)).)))))))).)....)))).))))))))..))))))

Structure
acaucaagu      aa        c    --uu -        a  -  auu 
         gcuguu  caggugcu ugac    c auugcacu cu gu   g
         ||||||  |||||||| ||||    | |||||||| || ||    
         cgacga  gucuaCGA ACUG    G UAACGUGA ga cg   g
---------      ga        A    UUAU A        C  u  aca 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-301a

Accession MIMAT0026288
Description Cyprinus carpio ccr-miR-301a mature miRNA
Sequence 60 - CAGUGCAAUAGUAUUGUCAAAGC - 82
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925