miRBase entry: ccr-mir-27d

Stem-loop ccr-mir-27d


Accession
MI0023385
Description
Cyprinus carpio ccr-mir-27d precursor miRNA
Gene family
MIPF0000036; mir-27

Literature search
3 open access papers mention ccr-mir-27d
(17 sentences)

Sequence

ucuaagcgggugcagagcuuagcugauuggugaacaugcacgcuuuguuuuuugUUCACAGUGGCUAAGUUCUUCaccugaaaagaaa
(((...((((((.(((((((((((.((((.((((((...((.....))....))))))))))))))))))))).))))))...)))..

Structure
--   aag      c           g    g      -ugc  g 
  ucu   cgggug agagcuuagcu auug ugaaca    ac c
  |||   |||||| ||||||||||| |||| ||||||    || u
  aga   guccaC UCUUGAAUCGG UGAC ACUUgu    ug u
aa   aaa      U           -    -      uuuu  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-27d

Accession MIMAT0026285
Description Cyprinus carpio ccr-miR-27d mature miRNA
Sequence 55 - UUCACAGUGGCUAAGUUCUUC - 75
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925