miRBase entry: ccr-mir-196b

Stem-loop ccr-mir-196b


Accession
MI0023358
Description
Cyprinus carpio ccr-mir-196b precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
2 open access papers mention ccr-mir-196b
(6 sentences)

Sequence

caagcuggucugugauuUAGGUAGUUUCAAGUUGUUGGGcuggacguuuaauuucacaggaaccugaaacugccugaauugcuccaguu
..((((((...((((((((((((((((((.(((.(((...((((........))))))).))).)))))))))))))))))).))))))

Structure
ca      ucu                  A   G   GGc    cgu 
  agcugg   gugauuUAGGUAGUUUCA GUU UUG   ugga   u
  ||||||   |||||||||||||||||| ||| |||   ||||    
  uugacc   cguuaaguccgucaaagu caa gac   acuu   u
--      --u                  c   g   ---    uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature ccr-miR-196b

Accession MIMAT0026254
Description Cyprinus carpio ccr-miR-196b mature miRNA
Sequence 18 - UAGGUAGUUUCAAGUUGUUGGG - 39
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 22303472
    Identification and profiling of microRNAs from skeletal muscle of the common carp
    Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
    PLoS One (2012) 7:e30925