Stem-loop ccr-mir-140

Accession

MI0023326

Description

Cyprinus carpio ccr-mir-140 precursor miRNA

Gene family

MIPF0000085; mir-140

Literature search

1 open access papers mention ccr-mir-140
(1 sentences)

Sequence

gucuccuguguccuguCAGUGGUUUUACCCUAUGGUAGguuacgucauacuguucUACCACAGGGUAGAACCACGGAccggaugucuggag
..((((.((((((.(((.(((((((((((((.(((((((..(((......)))))))))).))))))))))))).))).))))).).))))

Structure

gu    u -     u   A             A       uu   uc 
  cucc g ugucc guC GUGGUUUUACCCU UGGUAGg  acg  a
  |||| | ||||| ||| ||||||||||||| |||||||  |||   
  gagg c guagg cAG CACCAAGAUGGGA ACCAUcu  ugu  u
--    u u     c   G             C       --   ca 

Annotation confidence Not enough data

Genome context

Unknown

Mature ccr-miR-140-5p

• Accession: MIMAT0026220
• Description: Cyprinus carpio ccr-miR-140-5p mature miRNA
• Sequence: 17 - CAGUGGUUUUACCCUAUGGUAG - 38
• Evidence: experimental ; Illumina [1]

Mature ccr-miR-140-3p

• Accession: MIMAT0026221
• Description: Cyprinus carpio ccr-miR-140-3p mature miRNA
• Sequence: 56 - UACCACAGGGUAGAACCACGGA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 22303472
   Identification and profiling of microRNAs from skeletal muscle of the common carp
   Yan X, Ding L, Li Y, Zhang X, Liang Y, Sun X, Teng CB
   PLoS One (2012) 7:e30925