miRBase entry: cme-MIR396d

Stem-loop cme-MIR396d


Accession
MI0023251
Description
Cucumis melo cme-MIR396d precursor miRNA
Gene family
MIPF0000047; MIR396


Sequence

gccaugcuuUUCCACAGCUUUCUUGAACUUucucugcucuucccuucuucucacaaucaauuuuguaaguaaaaucucucuuagauuuuacccaaaaguuaaauuuaaaaaaaaaaaaaaagaaacuuuggaaguucaagaaagcugugggagaacauggca
((((((.(((((((((((((((((((((((((....................((((......))))..(((((((((.....)))))))))...((((((.......................))))))))))))))))))))))))))))))).)))))).

Structure
-      c                         --ucugcucuucccuucuucucacaaucaauuuuguaa         c 
 gccaug uuUUCCACAGCUUUCUUGAACUUuc                                      guaaaaucu u
 |||||| |||||||||||||||||||||||||                                      ||||||||| c
 cgguac agagggugucgaaagaacuugaagg                                      cauuuuaga u
a      a                         uuucaaagaaaaaaaaaaaaaaauuuaaauugaaaacc         u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR396d

Accession MIMAT0026147
Description Cucumis melo cme-miR396d mature miRNA
Sequence 10 - UUCCACAGCUUUCUUGAACUU - 30
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877