miRBase entry: cme-MIR169l

Stem-loop cme-MIR169l


Accession
MI0023202
Description
Cucumis melo cme-MIR169l precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention cme-MIR169l
(1 sentences)

Sequence

uuaaguuggcaaguuaucuuuggcuuacuucauaaacuucucucuuuucauguuaggucuuuucuuucgauauuaucuuuaagaaaauguuuaaaauugucgagugauuagguuuaaaaaauuggauguuacuaaaauggaagugauguauaguaugagaaaauaagagcauugugugaUAGCCAAAAAUGACUUGCCUGCaacauagu
....((.((((((((((.(((((((.....(((((..((((...(((((((.((((((((..((.(((((((.....((((((......))))))..))))))).))..))))))))...((((.((((((((........)))))))).)))))))))))....))))..)))))....))))))).)))))))))).))........

Structure
----uuaa  u          c       uacuu     ac    -cuc       ------------------------------------g        uu  u       uuauc      aa 
        gu ggcaaguuau uuuggcu     cauaa  uucu    uuuucau                                     uuaggucu  uc uucgaua     uuuaag  a
        || |||||||||| |||||||     |||||  ||||    |||||||                                     ||||||||  || |||||||     ||||||   
        CG CCGUUCAGUA AAACCGA     guguu  gaga    aagagua                                     aauuugga  ag gagcugu     aaauuu  a
ugauacaa  U          A       -Uagu     ac    auaa       ugauauguagugaagguaaaaucauuguagguuaaaa        uu  u       ---ua      gu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR169l

Accession MIMAT0026098
Description Cucumis melo cme-miR169l mature miRNA
Sequence 180 - UAGCCAAAAAUGACUUGCCUGC - 201
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877