miRBase entry: cme-MIR169a

Stem-loop cme-MIR169a


Accession
MI0023199
Description
Cucumis melo cme-MIR169a precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention cme-MIR169a
(1 sentences)

Sequence

cuuguuugguagccaaaaaugacuugccuguaggacauuaucuucuuaauacuaauuuugaguuucuuaaauauugaagagacucuuaauuauuaguuauauuacgggcaguuguuuuaggcuaauuugacagacucuuuucgaucauguuagauuuuuucuucccuuuuaacuacgaaaauaugaaaaguuucuuaucaagaaagaguuaagaucaaagagagguacaucucgaaaagaaaaguauuguuugaUAGCCAAAAAUGACUUGCCUGcuaauucgaugagcaaaagagaucuaguuuuauuacuuagaacuugaaugagcuucauuuucaggcagucuuuuuggcuaaucuaacaag
((((((.((((((((((((.((((.((((((((((........)))))....(((((..(((((((((........)))))))))..)))))........((((((((((((((((((.(((((.((.((((((((((((((((..((((.....((((((((...((((((((.(.......(((.(((...))).))).....)))))))))...)))))))).)))).)))))))))...)).))))).))))))).)))))))).)))))).))))..(((((((....(((.((((((......)).)))).)))......)).)))))..)))))))))))))))))).))).))))))

Structure
      u   -         u    u     uaggacauuaucuucuuaauacuaauuuugaguuucuuaaauauugaagagacucuuaauuauuaguuau    -      -        a     a  u     -  ---         uc    uagau        ccc        a gaaaaua   a   u 
cuuguu ggu agccaaaaa gacu gccug                                                                      auua cgggca guuguuuu ggcua uu gacag ac   ucuuuucga  augu     uuuuucuu   uuuuaacu c       uga aag  
|||||| ||| ||||||||| |||| |||||                                                                      |||| |||||| |||||||| ||||| || ||||| ||   |||||||||  ||||     ||||||||   |||||||| |       ||| ||| u
gaacaa cua ucgguuuuu cuga cggac                                                                      uaau GUCCGU CAGUAAAA CCGAU ag uuguu ug   agaaaagcu  uaca     ggagagaa   agaauuga g       acu uuc  
      u   a         -    -     --------------uuuuacuucgaguaaguucaagauucauuauuuugaucuagagaaaacgaguagcu    c      U        A     -  u     a  aaa         -c    ----u        acu        - --aaaga   a   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR169a

Accession MIMAT0026095
Description Cucumis melo cme-miR169a mature miRNA
Sequence 255 - UAGCCAAAAAUGACUUGCCUG - 275
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877