miRBase entry: cme-MIR169m

Stem-loop cme-MIR169m


Accession
MI0023196
Description
Cucumis melo cme-MIR169m precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
1 open access papers mention cme-MIR169m
(1 sentences)

Sequence

auuguuugaUAGCCAAAAAUGACUUGCCUGCuaauucgaugagcaaaagagaucuaguuuuauuacuuagaacuugaaugagcuucauuuucaggcagucuuuuuggcuaaucuaacaag
.(((((.((((((((((((.((((.(((((..(((..((.(..((...(((.((((((......)).)))).)))...))..).)))))..)))))))))))))))))).))).))))).

Structure
a     u   -         U    U     Cu   uc  u ag  aaa   a    -  uu 
 uuguu gaU AGCCAAAAA GACU GCCUG  aau  ga g  ca   gag ucua gu  u
 ||||| ||| ||||||||| |||| |||||  |||  || |  ||   ||| |||| ||   
 aacaa cua ucgguuuuu cuga cggac  uua  cu c  gu   uuc agau ca  a
g     u   a         -    -     uu   --  u ga  aag   a    u  uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cme-miR169m

Accession MIMAT0026092
Description Cucumis melo cme-miR169m mature miRNA
Sequence 10 - UAGCCAAAAAUGACUUGCCUGC - 31
Evidence not_experimental

References

  1. PubMed ID: 22753475
    The genome of melon (Cucumis melo L.)
    "Garcia-Mas J, Benjak A, Sanseverino W, Bourgeois M, Mir G, Gonzalez VM, Henaff E, Camara F, Cozzuto L, Lowy E, Alioto T, Capella-Gutierrez S, Blanca J, Canizares J, Ziarsolo P, Gonzalez-Ibeas D, Rodriguez-Moreno L, Droege M, Du L, Alvarez-Tejado M, Lorent"
    "Proc Natl Acad Sci U S A (2012) 109:11872-11877