miRBase entry: mdm-MIR169f

Stem-loop mdm-MIR169f


Accession
MI0023172
Description
Malus domestica mdm-MIR169f precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
4 open access papers mention mdm-MIR169f
(9 sentences)

Sequence

gaguguauaacaUGAAGAGAAGAGCGUUGUUUGGuagccaaggaugacuugccugcukccucuccuaauucuaauccaauccaauccaagaggaguccuacguuguuggguuucccagcagcaggcaccaggcaggucuccuuuggcuaacuugacagccucuucuucucaugcuauacccuu
(((.(((((.(((((.((((((((.((((((.(((((((((((..((((((((((...((((((((........................)))))......(((((((((...))))))))))))...))))))))))..)))))))).))).)))))))))))))).))))).))))).)))

Structure
   u     a     A        C      U   -        au          cuk   cuccuaauucuaauccaauccaauccaagaggaguccuac         u 
gag guaua caUGA GAGAAGAG GUUGUU GGu agccaagg  gacuugccug   ccu                                        guuguuggg  
||| ||||| ||||| |||||||| |||||| ||| ||||||||  ||||||||||   |||                                        ||||||||| u
uuc cauau guacu uucuucuc cgacag uca ucgguuuc  cuggacggac   gga                                        cgacgaccc  
   c     c     c        -      u   a        cu          cac   ----------------------------------------         u 


Annotation confidence Not enough data
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Genome context
MDC001494.456: 32862-33044 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR169f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR169f

Accession MIMAT0026068
Description Malus domestica mdm-miR169f mature miRNA
Sequence 13 - UGAAGAGAAGAGCGUUGUUUGG - 34
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47