miRBase entry: mdm-MIR171o

Stem-loop mdm-MIR171o


Accession
MI0023170
Description
Malus domestica mdm-MIR171o precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
9 open access papers mention mdm-MIR171o
(40 sentences)

Sequence

UGGGAUGUUGGUAUGGUUCAAucaaauaaaaucucucaaaauuuggguccuuuaauuugauugagccgugccaauaucaca
...((((((((((((((((((((((((.(((...(((((...)))))...))).))))))))))))))))))))))))...

Structure
UGG                        a   ucu     a 
   GAUGUUGGUAUGGUUCAAucaaau aaa   cucaa  
   |||||||||||||||||||||||| |||   ||||| a
   cuauaaccgugccgaguuaguuua uuu   ggguu  
aca                        a   ccu     u 


Annotation confidence Not enough data
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Genome context
Unknown

Database links

Mature mdm-miR171o

Accession MIMAT0026066
Description Malus domestica mdm-miR171o mature miRNA
Sequence 1 - UGGGAUGUUGGUAUGGUUCAA - 21
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47