miRBase entry: mdm-MIR7120a

Stem-loop mdm-MIR7120a


Accession
MI0023141
Description
Malus domestica mdm-MIR7120a precursor miRNA
Gene family
MIPF0001516; MIR7120


Sequence

auguauguauauguauuaaaauguucuuuugccagccaauguggcuUGUUAUAUUGUCAGAUUGUCAaucugaaccuuuaauuaccauuaauuuacguaauuaaugguucagauugaCAGUCUGACAAUAUAACGUGCcaaacuguuuggcaauugagcauuuucauacauauauauauau
((((((((((((((((.(((((((((..(((((((.((...((((.((((((((((((((((((((((((((((((.((((((((...........)))))))).)))))))))))))))))))))))))))))).))))...)).)))))))..))))))))).))))))))))))))))

Structure
                u         uu       c  aug    u                              u        cauu 
auguauguauauguau aaaauguuc  uugccag ca   uggc UGUUAUAUUGUCAGAUUGUCAaucugaacc uuaauuac    a
|||||||||||||||| |||||||||  ||||||| ||   |||| |||||||||||||||||||||||||||||| ||||||||    a
uauauauauauacaua uuuuacgag  aacgguu gu   acCG GCAAUAUAACAGUCUGACaguuagacuugg aauuaaug    u
                c         uu       u  caa    U                              u        cauu 


Annotation confidence Not enough data
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Genome context
MDC017840.207: 3632-3812 [+]

Database links

Mature mdm-miR7120a-5p

Accession MIMAT0026037
Description Malus domestica mdm-miR7120a-5p mature miRNA
Sequence 47 - UGUUAUAUUGUCAGAUUGUCA - 67
Evidence experimental
miRNAseq [1]

Mature mdm-miR7120a-3p

Accession MIMAT0037472
Description Malus domestica mdm-miR7120a-3p mature miRNA
Sequence 118 - CAGUCUGACAAUAUAACGUGC - 138
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47

  2. Identification of apple miRNAs and their potential role in fire blight resistance
    "Kaja E, Szczesniak MW, Jensen PJ, Axtell MJ, McNellis T, Makalowska I"
    Tree Genet Genomes. (2014) 11:812