miRBase entry: mdm-MIR2118a

Stem-loop mdm-MIR2118a


Accession
MI0023138
Description
Malus domestica mdm-MIR2118a precursor miRNA
Gene family
MIPF0001409; MIR2118_2

Literature search
1 open access papers mention mdm-MIR2118a
(5 sentences)

Sequence

gagagaagggggaaagggagaaagaguuugaggaaguuauuggacuuaguagcucggugagaaaacauugaggaucuggaguucuucuucucCUACCGAUGCCACUAAGUCCCAugauuuccucugccuccuccuuuucccaccuuuuuuc
((((((((((((((((((((...(((...(((((((((((.(((((((((.((((((((((((......(((((........))))))))))..))))).)).))))))))).)))))))))))...)))))))))))))).)))))))))

Structure
         -           aaa   uuu           u         a  -     --     aacauu     ucu 
gagagaagg gggaaagggag   gag   gaggaaguuau ggacuuagu gc ucggu  gagaa      gagga   g
||||||||| |||||||||||   |||   ||||||||||| ||||||||| || |||||  |||||      |||||    
cuuuuuucc cccuuuuccuc   cuc   cuccuuuaguA CCUGAAUCA CG AGCCA  cucuu      cuucu   g
         a           ---   cgu           C         C  U     UC     ------     uga 


Annotation confidence Not enough data
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Genome context
MDC017130.228: 6718-6868 [+]

Database links

Mature mdm-miR2118a

Accession MIMAT0026034
Description Malus domestica mdm-miR2118a mature miRNA
Sequence 93 - CUACCGAUGCCACUAAGUCCCA - 114
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47