miRBase entry: mdm-MIR408c

Stem-loop mdm-MIR408c


Accession
MI0023136
Description
Malus domestica mdm-MIR408c precursor miRNA
Gene family
MIPF0000102; MIR408

Literature search
4 open access papers mention mdm-MIR408c
(15 sentences)

Sequence

aaguauuugaguaaugcggaaagagaguuaauaagACAGGGAAGAGGUAGAGCAUGgauggaguucucaagagcaaaauagagcucuugugacucuacucaugcacugccuruucccuggcuuugccucccucuccuuccuuuuucucauccucuu
(((....((((.((...((((.(((((.....(((.(((((((.((((((.((((((.(((((((..(((((((........))))))).))))))).)))))).)))))).))))))).))).......))))).))))...))))))....)))

Structure
   uauu    u  ugc    a     --uuaau   A       G      A      a       cu       aaa 
aag    ugag aa   ggaa gagag       aag CAGGGAA AGGUAG GCAUGg uggaguu  caagagc   a
|||    |||| ||   |||| |||||       ||| ||||||| |||||| |||||| |||||||  |||||||    
uuc    acuc uu   ccuu cucuc       uuc gucccuu uccguc cguacu aucucag  guucucg   u
   uccu    -  uuu    c     ccuccgu   g       r      a      c       -u       aga 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mdm-miR408c

Accession MIMAT0026032
Description Malus domestica mdm-miR408c mature miRNA
Sequence 36 - ACAGGGAAGAGGUAGAGCAUG - 56
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47