Stem-loop mdm-MIR828a

Accession

MI0023133

Description

Malus domestica mdm-MIR828a precursor miRNA

Gene family

MIPF0000544; MIR828

Literature search

5 open access papers mention mdm-MIR828a
(97 sentences)

Sequence

uccucuuuguaauguuUCUUGCUCAAAUGAGUAUUCCAgccacaguuugccugcagcuugcauauauauauauauauauauauagcgcuggugcuucugcaauucugagaugcucauuugagcaagcagcguuacaagagga
(((((((.((((((((.((((((((((((((((((.(((...(((...((...((((..((.(((((((((....)))))))))))))))..))..))).....))).)))))))))))))))))).)))))))))))))))

Structure

       u        U                  C   --cca   uuu  cug    uu  a         a 
uccucuu guaauguu CUUGCUCAAAUGAGUAUU CAg     cag   gc   cagc  gc uauauauau u
||||||| |||||||| |||||||||||||||||| |||     |||   ||   ||||  || |||||||||  
aggagaa cauugcga gaacgaguuuacucguag guc     guc   cg   gucg  cg auauauaua a
       -        c                  a   uuaac   -uu  -ug    --  -         u 

Annotation confidence Not enough data

Genome context

MDC012097.538: 5508-5649 [-]

Mature mdm-miR828a

• Accession: MIMAT0026029
• Description: Malus domestica mdm-miR828a mature miRNA
• Sequence: 17 - UCUUGCUCAAAUGAGUAUUCCA - 38
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47