miRBase entry: mdm-MIR827

Stem-loop mdm-MIR827


Accession
MI0023132
Description
Malus domestica mdm-MIR827 precursor miRNA
Gene family
MIPF0001785; MIR827_4

Literature search
4 open access papers mention mdm-MIR827
(4 sentences)

Sequence

uuugcagcaguggauauguuuguugcuggucaccuaguuauuccaugguuccauccaucugcuggcuucaauauauaauuuguguuuguauauguuguauauauacaugcaguauuguauauuugacccauggcggacguucugaUUAGAUGACCAUCAACGAACAcauucaugaugcaag
.(((((...((((((.(((((((((.((((((.(((((((....((((......))))(((((((.((.((((((((((...(((.(((((((((...))))))))).)))..)))))))))).)).))..)))))......))))))).)))))).))))))))).))))))..))))).

Structure
u     gca      a         c      c       uuccaugguuccauccau     --  c  c          uug   u         u 
 uugca   guggau uguuuguug ugguca cuaguua                  cugcu  gg uu aauauauaau   ugu uguauaugu  
 |||||   |||||| ||||||||| |||||| |||||||                  |||||  || || ||||||||||   ||| ||||||||| g
 aacgu   uacuua ACAAGCAAC ACCAGU GAUUagu                  ggcgg  cc ag uuauauguua   acg acauauaua  
g     -ag      c         U      A       ------------cuugca     ua  c  u          -ug   u         u 


Annotation confidence Not enough data
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Genome context
MDC007691.315: 6054-6234 [+]

Database links

Mature mdm-miR827

Accession MIMAT0026028
Description Malus domestica mdm-miR827 mature miRNA
Sequence 146 - UUAGAUGACCAUCAACGAACA - 166
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47