miRBase entry: mdm-MIR535d

Stem-loop mdm-MIR535d


Accession
MI0023131
Description
Malus domestica mdm-MIR535d precursor miRNA
Gene family
MIPF0000136; MIR535

Literature search
6 open access papers mention mdm-MIR535d
(12 sentences)

Sequence

gauguugugUGACGACGAGAGAGAGCACGCuugucaucacccaugaaaggaucaugguuguuuacgggcgugcucuuucuuguugucauaaaguc
(((....(((((((((((((((((((((((((((...((.((((((.....)))))).))...)))))))))))))))))))))))))))..)))

Structure
   guug                           cau  c      a 
gau    ugUGACGACGAGAGAGAGCACGCuugu   ca ccauga a
|||    |||||||||||||||||||||||||||   || |||||| g
cug    auacuguuguucuuucucgugcgggca   gu gguacu g
   --aa                           uuu  u      a 


Annotation confidence Not enough data
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Genome context
MDC011049.358: 3593-3687 [+]

Database links

Mature mdm-miR535d

Accession MIMAT0026027
Description Malus domestica mdm-miR535d mature miRNA
Sequence 10 - UGACGACGAGAGAGAGCACGC - 30
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47