miRBase entry: mdm-MIR399h

Stem-loop mdm-MIR399h


Accession
MI0023112
Description
Malus domestica mdm-MIR399h precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
6 open access papers mention mdm-MIR399h
(8 sentences)

Sequence

cagagcaaagucuccucuggcauguagccacuuacaauuacaaaugcuuaauucuggcugaacaagcuggccagccuugcauuauuuuuguagugugcuuuaUGCCAAAGGAGAUUUGCUCGG
..(((((((.((((((.(((((((.(((((((.((((.....(((((......(((((((.......)))))))....)))))....)))))))).))).))))))).)))))))))))))..

Structure
ca       g      c       u   -    u    uuaca     uuaauu       aa 
  gagcaaa ucuccu uggcaug agc cacu acaa     aaugc      cuggcug  c
  ||||||| |||||| ||||||| ||| |||| ||||     |||||      |||||||  a
  CUCGUUU AGAGGA ACCGUau ucg guga uguu     uuacg      gaccggu  a
GG       -      A       u   u    -    -uuua     --uucc       cg 


Annotation confidence Not enough data
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Genome context
MDC021118.72: 3807-3929 [-]

Database links

Mature mdm-miR399h

Accession MIMAT0026008
Description Malus domestica mdm-miR399h mature miRNA
Sequence 103 - UGCCAAAGGAGAUUUGCUCGG - 123
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47