Stem-loop mdm-MIR399b

Accession

MI0023106

Description

Malus domestica mdm-MIR399b precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

6 open access papers mention mdm-MIR399b
(8 sentences)

Sequence

ugaauaacagugcaaaucuccuuuggcagaaaugauucuggugcauuuacucuugaguacuaccacuggauaugcuuucUGCCAAAGGAGAAUUGCCCUGcaauuca
(((((..(((.((((.((((((((((((((((..(((((((((....((((....))))....))))))).))..)))))))))))))))).)))).)))..)))))

Structure

     aa   u    a                ug  -       cauu    c 
ugaau  cag gcaa ucuccuuuggcagaaa  au ucuggug    uacu u
|||||  ||| |||| ||||||||||||||||  || |||||||    ||||  
acuua  GUC CGUU AGAGGAAACCGUcuuu  ua aggucac    auga u
     ac   C    A                cg  u       cauc    g 

Annotation confidence Not enough data

Genome context

MDC009537.404: 9792-9898 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mdm-MIR399b

Mature mdm-miR399b

• Accession: MIMAT0026002
• Description: Malus domestica mdm-miR399b mature miRNA
• Sequence: 80 - UGCCAAAGGAGAAUUGCCCUG - 100
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47