Stem-loop mdm-MIR397b

Accession

MI0023101

Description

Malus domestica mdm-MIR397b precursor miRNA

Gene family

MIPF0000120; MIR397

Literature search

3 open access papers mention mdm-MIR397b
(10 sentences)

Sequence

ccagauugaagaaacaucaUUGAGUGCAGCGUUGAUGAAAguucguauugcuucugaaucuucauuaggacaucgaaacauuucaucaacgcugcacccaauuauguuucuauccauuuugg
(((((.((.((((((((.((((.((((((((((((((((((((((...(.((..(((....)))..)).)...)).))).))))))))))))))))).)))).))))))))...)).)))))

Structure

     u  --a        c    A                 -   -  uau g  uc   a 
ccaga ug   agaaacau aUUG GUGCAGCGUUGAUGAAA guu cg   u cu  uga u
||||| ||   |||||||| |||| ||||||||||||||||| ||| ||   | ||  |||  
gguuu ac   ucuuugua uaac cacgucgcaacuacuuu caa gc   a ga  acu c
     u  cua        u    c                 a   a  uac g  uu   u 

Annotation confidence Not enough data

Genome context

MDC000270.326: 755-876 [+]

Mature mdm-miR397b

• Accession: MIMAT0025997
• Description: Malus domestica mdm-miR397b mature miRNA
• Sequence: 20 - UUGAGUGCAGCGUUGAUGAAA - 40
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47