Stem-loop sequence mdm-MIR396c

Accession

MI0023095 (change log)

Description

Malus domestica miR396c stem-loop

Gene family

MIPF0000047; MIR396

Literature search

8 open access papers mention mdm-MIR396c
(37 sentences)

Stem-loop

   u       c                   a    aauucuc    -    aaaum 
5'  ugccaug uuuuccacagcuuucuuga cuuc       ugcu gucu     u
    ||||||| ||||||||||||||||||| ||||       |||| ||||      
3'  acgguac agagggugucgaaagaacu gaag       acga cagg     c
   a       c                   c    --guacc    u    acuuu 

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates	Overlapping transcripts
MDC003523.387: 23887-23993 [+]	intergenic
MDC011181.611: 958-1064 [-]	intergenic

Clustered miRNAs

< 10kb from mdm-MIR396c

• mdm-MIR396c: MDC003523.387: 23887-23993 [+]
• mdm-MIR396a: MDC003523.387: 32684-32832 [-]

Database links

• miRBase Tracker:MI0023095

Mature sequence mdm-miR396c

• Accession: MIMAT0025991
• Sequence: 12 - uuccacagcuuucuugaacuu - 32
• Evidence: experimental; miRNAseq [1]

References

1. PMID:22704043 "Apple miRNAs and tasiRNAs with novel regulatory networks" Xia R, Zhu H, An YQ, Beers EP, Liu Z Genome Biol. 13:R47(2012).